Publications
You can also find my articles on Google Scholar.
Technical Reports
Journal
C. Maffei, G. Girard, K. Schilling, B. Aydogan, N. Aduluru, A. Zhylka, Y. Wu, M. Mancini, A. Hamamci, A. Sarica, A. Telliac, S. Baete, D. Karimi, F. Yeh, M. Yildiz, A. Gholipour, Y. Bihan-Poudec, B. Hiba, An. Quattrone, Al. Quattrone, T. Boshkovski, N. Stikov, P.T. Yap, A. De Luca, J. Pluim, A. Leemans, V. Prabhakaran, B.B. Bendlin, A. Alexander, B. Landman, E. Canales-Rodriguez, M. Barakovic, J. Rafael-Patino, T. Yu, G. Rensonnet, S. Schiavi, A. Daducci, M. Pizzolato, E. Fischi-Gomez, J.P. Thiran, G. Dai, G. Grisot, N. Lazovski, S. Puch, M. Ramos, P. Rodrigues, V. Prchkovska, R. Jones, J. Lehman, S. Haber, A. Yendiki. 2022.
Insights from the IronTract challenge: optimal methods for mapping brain pathways from multi-shell diffusion MRI
NeuroImage, 257, Pp. 119327.N.A. Hubbard, R.P. Auerbach, V. Siless, N. Lo, I.R. Frosch, D.E. Clark, R. Jones, R. Kremens, M. Pinaire, F. Vaz De Souza, S. Ghosh, A. Henin, S.G. Hofmann, D.A. Pizzagalli, I.M. Rosso, A. Yendiki, S. Whitfield-Gabrieli, J.D.E. Gabrieli. 2022.
Connectivity patterns evoked by fearful faces demonstrate reduced flexibility across a shared dimension of adolescent anxiety and depression
Clinical Psychological Science, 11 (1), Pp. 3-22.C. Liu, W. Ammon, R. Jones, J. Nolan, R. Wang, S. Chang, M. P. Frosch, A. Yendiki, D. A. Boas, C. Magnain, B. Fischl, H. Wang. 2022.
Refractive-index matching enhanced polarization sensitive optical coherence tomography quantification in human brain tissue
Biomedical Optics Express, 13(1), Pp. 358-372.C. Maffei, C. Lee, M. Planich, M. Ramprasad, N. Ravi, D. Trainor, Z. Urban, M. Kim, R. Jones, A. Henin, S.G. Hofmann, D.A. Pizzagalli, R.P. Auerbach, J.D.E. Gabrieli, S. Whitfield-Gabrieli, D.N. Greve, S.N. Haber, A. Yendiki. 2021.
Using diffusion MRI data acquired with ultra-high gradients to improve tractography in routine-quality data
NeuroImage, 245, Pp. 118706.R. Jones, C. Maffei, J. Augustinack, B. Fischl, H. Wang, B. Bilgic, A. Yendiki. 2021.
High-fidelity approximation of grid- and shell-based sampling schemes from undersampled DSI using compressed sensing: Post mortem validation
NeuroImage, 244, Pp. 118621.R.P. Auerbach, D. Pagliaccio, N.A. Hubbard, I. Frosch, R. Kremens, E. Cosby, R. Jones, V. Siless, N. Lo, A. Henin, S.G. Hofmann. 2021.
Reward-Related Neural Circuitry in Depressed and Anxious Adolescents: A Human Connectome Project
Journal of the American Academy of Child & Adolescent Psychiatry. 61(2), pp.308-320.R. Jones, G. Grisot, J. Augustinack, C. Magnain, D. A. Boas, B. Fischl, H. Wang, A. Yendiki. 2020.
Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain
NeuroImage, 214, Pp. 116704.V. Siless, N. A. Hubbard, R. Jones, J. Wang, N. Lo, C. C.C. Bauer, M. Goncalves, I. Frosch, D. Norton, G. Vergara, K. Conroy, F. Vaz De Souza, I. M. Rosso, A. H. Wickham, E. A. Cosby, M. Pinaire, D. Hirshfeld-Becker, D. A. Pizzagalli, A. Henin, S. G. Hofmann, R. P. Auerbach, S. Ghosh, J. Gabrieli, S. Whitfield-Gabrieli, A. Yendiki. 2020.
Image acquisition and quality assurance in the boston adolescent neuroimaging of depression and anxiety study
NeuroImage Clin., 26, Pp. 102242.N. A. Hubbard, V. Siless, I. Frosch, M. Goncalves, N. Lo, C. Bauer, K. Conroy, E. Cosby, A. Hay, R. Jones, M. Pinaire, F. Vaz De Souza, G. Vergara, S. Ghosh, A. Henin, D. R. Hirshfeld-Becker, S. Hofmann, I. M. Rosso, R. P. Auerbach, D. Pizzagalli, A. Yendiki, JDE Gabrieli, S. Whitfield-Gabrieli. 2020.
Brain Function and Clinical Characterization in a Human Connectome Adolescent Depression and Anxiety Study
NeuroImage Clin., 27, Pp. 102240.
Preprints
- C.J. Liu, W. Ammon, R. Jones, J.C. Nolan, D. Gong, C. Maffei, B.L. Edlow, J.C. Augustinack, C. Magnain, A. Yendiki, M. Villiger, B. Fischl, H. Wang. 2023.
Quantitative imaging of three-dimensional fiber orientation in the human brain via two illumination angles using polarization-sensitive optical coherence tomography
bioRxiv, pp.2023-10.
Conference Presentations
R. Jones, C. Maffei, Q. Tian, S. Huang, V. Sundaresan, A. Yendiki. 2022.
In vivo demonstration of generalized anisotropy profiles for resolving boundaries between subcortical gray and white matter
In ISMRM (oral presentation, summa cum laude).R. Jones, G. Grisot, J. Augustinack, D.A. Boas, B. Fischl, H. Wang, B. Bilgic, A. Yendiki. 2019.
Validation of DSI compressed sensing reconstruction in ex vivo human brain
In ISMRM (oral presentation).
Conference Papers and Abstracts
H. Veeraraghavan, R. Jones, D. You, N. Tyagi, J.M. Balter. 2024.
Kalman filter-based tracking of abdominal organ motions along the medial axis.
MRinRT, 2024.C. Maffei, E. Dann, M. Celestine, R. Jones, J. Lehman, H. Wang, S. Haber, and A. Yendiki. 2024.
Multi-modal multi-scale imaging reveals that long-association cortico-cortical systems are composed of short-range relay fibers
In OHBM, p. 2153.C. Maffei, E. Dann, R. Jones, M.R. Celestine, H. Wang, S. Haber, and A. Yendiki. 2024.
Multi-modal multi-scale imaging reveals that long-association cortico-cortical systems are composed of short-range relay fibers
In ISMRM, p. 2156.C. Maffei, G. Girard, K.G. Schilling, D.B. Aydogan, N. Adluru, A. Zhylka, Y. Wu, M. Mancini, A. Hamamci, A. Sarica, D. Karimi, F.C. Yeh, M.E. Yildiz, A. Gholipour, A. Quattrone, A. Quattrone, P.T. Yap, A. de Luca, J. Pluim, A. Leemans, V. Prabhakaran, B.B. Bendlin, A.L. Alexander, B.A. Landman, E.J. Canales-Rodr ́ıguez, M. Barakovic, J. Rafael-Patino, T. Yu, G. Rensonnet, S. Schiavi, A. Daducci, M. Pizzolato, E. Fischi-Gomez, J.P. Thiran, G. Dai, G. Grisot, N. Lazovski, S. Puch, M. Ramos, P. Rodrigues, V. Prchkovska, R. Jones, J. Lehman, S. Haber, and A. Yendiki. 2021.
New insights from the IronTract challenge: Simple post-processing enhances the accuracy of diffusion tractography
In ISMRM, p. 0864.M. Kim, D. Pagliaccio, R. Jones, A. Henin, S.G. Hofmann, D.A. Pizzagalli, J.D.E. Gabrieli, R.P. Auerbach, S. Whitfield-Gabrieli, A. Yendiki. 2021.
Multivariate associations of brain function, structure, and mental health disorders in adolescents
In OHBM, p. 1142.R. Jones, C. Maffei, Q. Fan, J. Augustinack, B. Wichtmann, A. Nummenmaa, S. Huang, and A. Yendiki. 2021.
Validation of between-bundle differences and within-bundle continuity of microstructural indices in ex vivo human brain tissue
In ISMRM, p.3638.R. Jones, Q. Tian, C. Maffei, J. Augustinack, A. Nummenmaa, S. Huang, and A. Yendiki. 2021.
Generalized anisotropy profiles distinguish cortical and subcortical structures in ex vivo diffusion MRI
In ISMRM, p.2029.H. Wang, R. Jones, D. Varadarajan, C. Magnain, A. Yendiki, J.R. Polimeni, B. Fischl. 2021.
Optical property revealing vascular network and pathological lesion in human brain tissues with as-PSOCT
In Proc. SPIE BiOS, p.11629.A. Yendiki, R. Jones, A. Dalca, H. Wang, and B. Fischl. 2020.
Towards taking the guesswork (and the errors) out of diffusion tractography
In ISMRM, p.0856.C. Maffei, R. Jones, C. Johnson, H. Wang, A. Yendiki. 2020.
Investigating SLFI anatomy using high-resolution dMRI
In ISMRM, p4466.C. Maffei, G.Girard, K.G. Schilling, N. Adluru, D.B. Aydogan, A. Hamamci, F.C. Yeh, M. Mancini, Y. Wu, A. Sarica, A. Teillac, S.H. Baete, D. Karimi, Y.C. Lin, F. Boada, N. Richard, B. Hiba, A. Quattrone, Y. Hong, D. Shen, P.T. Yap, T. Boshkovski, J.S.W. Campbell, N. Stikov, G.B. Pike, B.B. Bendlin, A.L. Alexander, V. Prabhakaran, A. Anderson, B.A. Landman, E.J. Canales-Rodr ́ıguez, M. Barakovic, J. Rafael-Patino, T. Yu, G. Rensonnet, S. Schiavi, A. Daducci, M. Pizzolato, E. Fischi-Gomez, J.P. Thiran, G. Dai, G. Grisot, N. Lazovski, A. Puente, M. Rowe, I. Sanchez, V. Prchkovska, R. Jones, J. Lehman, S. Haber, and A. Yendiki. 2020.
The IronTract challenge: Validation and optimal tractography methods for the HCP diffusion acquisition scheme
In ISMRM, p.0849.N.A. Hubbard, N. Lo, M. Goncalves, I. Frosch, V. Siless, C.C. Bauer, K. Conroy, E. Cosby, A. Hay, R. Jones, M. Pinaire, F. Vaz De Souza, G. Vergara, A. Henin, D. Hirshfeld-Becker, S. Hofmann, D. Pizzagalli, A. Yendiki, R. Auerbach, S. Ghosh, J.D.E. Gabrieli, S. Whitfield-Gabrieli. 2019.
Cognitive control-related brain activation patterns predict adolescent anhedonia symptoms
In APS Annual Convention.G. Grisot, R. Jones, J. Augustinack, D. Boas, B. Fischl, H. Wang, A. Yendiki. 2018.
Validation of high angular resolution diffusion MRI models in the human brain with PS-OCT
In OHBM, p.1847.